[OPEN-ILS-GENERAL] Problem with upgrade script 2.12.6-3.0.0 on line 6839

Vaclav Jansa vaclav.jansa at gmail.com
Sat Aug 18 03:24:33 EDT 2018

Hello Josh,
many thanks for your hint. In accordance to this hint, I just try to
reingest authority records 'per partes'. Idealy with some scripting. I try
manually reingest first 200 authority records and it works.

I will share my script and probably also identified source of this issue.

Thanks and best regards


On Sat, Aug 18, 2018 at 1:30 AM Josh Stompro <stomproj at exchange.larl.org>

> Hello Vaclav, It looks like this error starts when you hit the authority
> reindex at the end of the upgrade script.
> It looks like the previous database updates have already been committed at
> that point, a new transaction runs for the authority reingest.  So you may
> be able to try running small batches of authority records to reingest at
> once, instead of trying to do them all at once.  That may help you narrow
> down the problem to being with a specific authority record vs being with
> the authority reindexing process as a whole.
> If you pick out one existing authority record, and change the update
> command to something like.
> UPDATE authority.record_entry SET id = id WHERE NOT DELETED and id=1234;
> -- where 1234= authority.record_entry.id that you want to target.
> Then you can try reindexing just one record and see if that succeeds.
> Create a new script that just contains the Reingest authority record
> section of the script (lines 6806-6852), and modify that and run it against
> your database.
> If one record succeeds, then it very well may be specific authority
> records that are causing the problems.
> You could try narrowing it down by running the update on groups of
> authority records.
> Here is a query that builds a query string to update 50 authority records
> at a time.
> select
> 'UPDATE authority.record_entry SET id = id WHERE NOT DELETED AND id
> BETWEEN '||min||' and '||max||' ;'
> from (
> select min(id),max(id),chunkno
> from (
> select
> id
> , ((ROW_NUMBER() over (ORDER BY id) - 1) / 50)+1 as chunkNo --change 50 to
> how many records you want in a group
> from authority.record_entry where not deleted and id>0
> ) x
> group by 3
> order by 1
> ) y
> ;
> Also, if you echo the queries as they are executed it may be clearer which
> group the problem is in. (psql -a option).  Once you narrow it down to a
> group, you can change the script to run one update per record, to find the
> specific record.
> You may also be able to modify the authority.extract_headings[1] function
> to spit out some debugging info.  It looks to me like the " transformed_xml
> := oils_xslt_process(marc, xfrm.xslt);" line is where the error is coming
> up, when the authority marc data is passed to the oils_xslt_process, along
> with the config.xml_transform.xslt data for the index that is being
> processed.  Maybe add a try block and then on catching an error output the
> marc data?  (I'm not that familiar with stored procedures though, to know
> how to go about doing that.  Looks like it is by using an EXCEPTION clause?)
> Josh Stompro - LARL IT Director
> 1 -
> http://git.evergreen-ils.org/?p=Evergreen.git;a=blob;f=Open-ILS/src/sql/Pg/version-upgrade/2.12.6-3.0.0-upgrade-db.sql;h=7a865a89db22c333e8da9e3e7750bc9d1fc8bb95;hb=HEAD#l4782
> -----Original Message-----
> From: Open-ils-general [mailto:
> open-ils-general-bounces at list.georgialibraries.org] On Behalf Of Václav
> Jansa
> Sent: Friday, August 17, 2018 7:04 AM
> To: Evergreen Discussion Group <open-ils-general at list.georgialibraries.org
> >
> Subject: [OPEN-ILS-GENERAL] Problem with upgrade script 2.12.6-3.0.0 on
> line 6839
> Hello Evergreeners,
> we are just trying to update our last production Evergreen installation
> (from 2.12 to 3.1), two are done without any issues, but with last one
> we encountered following error during first update step (2.12.6-3.0.0)
> psql:version-upgrade/2.12.6-3.0.0-upgrade-db.sql:6839: ERROR:  runtime
> error: file unknown-55cee649a7a0 element attribute
> xsl:attribute: Cannot add attributes to an element if children have been
> already added to the element.
>   at line 31.
> CONTEXT:  PL/Perl function "oils_xslt_process"
> PL/pgSQL function authority.extract_headings(text,integer[]) line 36 at
> assignment
> PL/pgSQL function authority.simple_heading_set(text) line 77 at FOR over
> SELECT rows
> PL/pgSQL function authority.indexing_ingest_or_delete() line 46 at FOR
> over SELECT rows
> psql:version-upgrade/2.12.6-3.0.0-upgrade-db.sql:6841: ERROR:  current
> transaction is aborted, commands ignored until end of transaction block
> psql:version-upgrade/2.12.6-3.0.0-upgrade-db.sql:6842: ERROR:  current
> transaction is aborted, commands ignored until end of transaction block
> psql:version-upgrade/2.12.6-3.0.0-upgrade-db.sql:6843: ERROR:  current
> transaction is aborted, commands ignored until end of transaction block
> psql:version-upgrade/2.12.6-3.0.0-upgrade-db.sql:6844: ERROR:  current
> transaction is aborted, commands ignored until end of transaction block
> psql:version-upgrade/2.12.6-3.0.0-upgrade-db.sql:6850: ERROR:  current
> transaction is aborted, commands ignored until end of transaction block
> I already try to check authority related scripts, but from my point of
> view, error is somewhere in our authority data in DB.
> Anybody else having the same experience? Do you have any idea how to
> find out what is causing the error?
> Do you have any tip, how to ad some debugging code into standard code,
> what will help us with finding probably failed data?
> Thanks for help and all recommendations
> Best regards
> Vaclav Jansa
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